Update IGV Sessions

This function allows updating the path to the reference genome and annotations for each IGV session (in XML format) within a user-specified directory. XML files are searched for in a recursive manner.

Usage

setPaths(directory, genome, annotations)

Arguments

directory

A String. Path to the directory containing the xml files.

genome

A String. Path to the genome on which reads have been aligned.

annotations

A String. Path to the annotation file (in GFF or GTF format).