Function reference • DiffSegR

All functions

SD(): Some robust SD estimators.

annotateNearest(): Annotate each provided differentialy expressed region (DER) with its closest annotation(s)

dea(): Differential expression analysis (DEA)

denoise(): denoise

diffStats(): Statistics on differentialy expressed regions.

exportResults(): Export DiffSegR results

loadData(): Compute the differential transcription profile (log2-FC per-base)

postHocTest(): postHocTest

segmentation(): Summarize the differential transcription landscape